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Difficult to replicate findings from repo #158

@ArtPoon

Description

@ArtPoon

There are a few minor technical issues that make it hard to replicate the findings:

  • The sequence alignments for Influenza B Virus (IBV) are missing from Zenodo, and the JSON grid files are missing from data/iss135/.
  • The R script iss135.R fail because reordering the metadata rows results in NA values for 36 proteins due to naming mismatches and for 5 proteins due to missing rows in stats files. When glm drops these, the 205 residuals mismatch the 246-element vectors in the plotting functions, which halts execution.
  • Researchers have to manually filter the dataset to the 205 valid proteins to run the script. The authors should clean up these naming mismatches and provide an executable script.

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