From eef9cc3f44dae32336506495ec882d2d10fd7a3d Mon Sep 17 00:00:00 2001
From: Ivan Ruiz Manuel <72193617+irm-codebase@users.noreply.github.com>
Date: Mon, 13 Jul 2026 11:23:57 +0200
Subject: [PATCH 01/20] Theme changes
---
docs/css/extra.css | 59 +
mkdocs.yaml | 96 +-
pixi.lock | 2067 ++++++++++++++-------------
pixi.toml | 1 +
resources/shapes/README.md | 9 -
tests/data_module_test/docs_test.py | 2 +-
6 files changed, 1154 insertions(+), 1080 deletions(-)
create mode 100644 docs/css/extra.css
delete mode 100644 resources/shapes/README.md
diff --git a/docs/css/extra.css b/docs/css/extra.css
new file mode 100644
index 0000000..97c5d95
--- /dev/null
+++ b/docs/css/extra.css
@@ -0,0 +1,59 @@
+.rst-badge {
+ font-size: 0.7rem;
+}
+
+/* reduce font size of rendered math */
+.katex-html {
+ font-size: 0.8rem;
+}
+
+/* Set this to match the logo */
+:root {
+ --md-primary-fg-color: #0e9c81ff;
+ --md-primary-fg-color--light: #23b89cff;
+ --md-primary-fg-color--dark: #026353ff;
+}
+
+.md-typeset, .md-nav, .md-tabs__link, .md-typeset .admonition, .md-typeset details, .md-typeset table:not([class]) {
+ font-size: 0.8rem;
+}
+
+.md-typeset h1, .md-typeset h2 {
+ font-weight: normal;
+ color: var(--md-typeset-color);
+}
+
+.doc-function h3 {
+ /* font-size: 1.0rem; */
+ margin-top: 3.0rem;
+}
+
+.bubble {
+ border-radius: 2px;
+ padding: 1px 4px 1px 4px;
+}
+
+
+/* Allow tables to be horizontally scrollable. */
+.md-typeset__scrollwrap {
+ overflow-x: auto;
+}
+
+
+.md-typeset li.xr-var-item, .md-typeset ul.xr-var-list {
+ display: contents;
+}
+
+.md-typeset .xr-section-details {
+ display: none;
+}
+
+.md-typeset ul.xr-dim-list li {
+ margin-bottom: 0;
+ margin-left: 0;
+}
+
+.md-typeset ul.xr-dim-list {
+ margin-bottom: 0;
+ margin-top: 0;
+}
diff --git a/mkdocs.yaml b/mkdocs.yaml
index 72341d7..d460e0a 100644
--- a/mkdocs.yaml
+++ b/mkdocs.yaml
@@ -1,75 +1,95 @@
# yaml-language-server: $schema=https://squidfunk.github.io/mkdocs-material/schema.json
-site_name: modelblocks
+site_name: Modelblocks documentation
site_url: https://modelblocks.readthedocs.io/
repo_name: docs
repo_url: https://github.com/modelblocks-org/docs/
edit_uri: edit/main/docs/
+extra_css:
+ - css/extra.css
theme:
+ font:
+ text: Lato
+ code: Fira Code
name: material
features:
- - navigation.footer
- - navigation.instant
+ - navigation.indexes
+ - navigation.top
- navigation.tabs
- navigation.tabs.sticky
- - navigation.indexes
+ - content.code.copy
+ - content.code.annotate
- search.suggest
- search.highlight
+ - search.share
- toc.follow
- palette:
- # Palette toggle for automatic mode
- - media: "(prefers-color-scheme)"
- toggle:
- icon: material/brightness-auto
- name: Switch to light mode
- primary: teal
- accent: blue grey
- # Palette toggle for light mode
- - media: "(prefers-color-scheme: light)"
- scheme: default
- toggle:
- icon: material/weather-sunny
- name: Switch to dark mode
- primary: teal
- accent: blue grey
- # Palette toggle for dark mode
- - media: "(prefers-color-scheme: dark)"
- scheme: slate
- toggle:
- icon: material/weather-night
- name: Switch to system preference
- primary: teal
- accent: blue grey
+ # palette:
+ # # Palette toggle for automatic mode
+ # - media: "(prefers-color-scheme)"
+ # toggle:
+ # icon: material/brightness-auto
+ # name: Switch to light mode
+ # primary: teal
+ # accent: blue grey
+ # # Palette toggle for light mode
+ # - media: "(prefers-color-scheme: light)"
+ # scheme: default
+ # toggle:
+ # icon: material/weather-sunny
+ # name: Switch to dark mode
+ # primary: teal
+ # accent: blue grey
+ # # Palette toggle for dark mode
+ # - media: "(prefers-color-scheme: dark)"
+ # scheme: slate
+ # toggle:
+ # icon: material/weather-night
+ # name: Switch to system preference
+ # primary: teal
+ # accent: blue grey
markdown_extensions:
- admonition
- - pymdownx.tasklist:
- custom_checkbox: true
+ - attr_list
+ - md_in_html
+ # - mkdocs-click
+ - def_list
+ - tables
- pymdownx.arithmatex:
generic: true
+ - pymdownx.details
- pymdownx.betterem:
smart_enable: all
- - pymdownx.details
- pymdownx.emoji:
emoji_index: !!python/name:material.extensions.emoji.twemoji
emoji_generator: !!python/name:material.extensions.emoji.to_svg
- pymdownx.highlight:
anchor_linenums: true
+ line_spans: __span
+ pygments_lang_class: true
+ - pymdownx.inlinehilite
- pymdownx.snippets:
- check_paths: true
- restrict_base_path: true
+ dedent_subsections: true
- pymdownx.superfences:
+ preserve_tabs: true
+ # FIXME: remove mermaid?
custom_fences:
- name: mermaid
class: mermaid
format: !!python/name:mermaid2.fence_mermaid_custom
+ - pymdownx.tabbed:
+ alternate_style: true
+ - pymdownx.tasklist:
+ clickable_checkbox: true
- toc:
anchorlink: true
+ permalink: "¶"
+ toc_depth: 3
plugins:
+ - autorefs
- git-committers:
enabled: true
repository: modelblocks-org/docs
branch: main
- - search
- mkdocstrings:
default_handler: python
handlers:
@@ -78,12 +98,12 @@ plugins:
show_bases: true
filters:
- "!^_"
- heading_level: 2
+ heading_level: 1
show_root_heading: true
merge_init_into_class: true
show_if_no_docstring: true
signature_crossrefs: true
- show_root_toc_entry: true
+ show_root_toc_entry: false
show_signature_annotations: true
inherited_members: false
show_labels: false
@@ -92,7 +112,7 @@ plugins:
- https://docs.python.org/3/objects.inv
- https://pandas.pydata.org/docs/objects.inv
- https://docs.xarray.dev/en/stable/objects.inv
-
+ - search
nav:
- Home: index.md
- Background:
@@ -104,4 +124,4 @@ nav:
- Developer_guidelines/requirements.md
- Developer_guidelines/templates.md
-copyright: Copyright © since 2025 modelblocks contributors (Apache 2.0 licensed)
+copyright: Copyright © since 2025 Modelblocks contributors (Apache 2.0 licensed)
diff --git a/pixi.lock b/pixi.lock
index d58870f..8a74f02 100644
--- a/pixi.lock
+++ b/pixi.lock
@@ -1,19 +1,43 @@
-version: 6
+version: 7
+platforms:
+- name: linux-64
+- name: osx-arm64
+- name: win-64
environments:
default:
channels:
- url: https://conda.anaconda.org/conda-forge/
- options:
- pypi-prerelease-mode: if-necessary-or-explicit
packages:
linux-64:
- conda: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-20_gnu.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/brotli-python-1.2.0-py314h3de4e8d_1.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hda65f42_9.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/icu-78.3-h33c6efd_0.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.45.1-default_hbd61a6d_102.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.7.5-hecca717_0.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/libffi-3.5.2-h3435931_0.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.2.0-he0feb66_18.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.2.0-he0feb66_18.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.8.2-hb03c661_0.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/libmpdec-4.0.0-hb03c661_1.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.52.0-hf4e2dac_0.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-15.2.0-h934c35e_18.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.41.3-h5347b49_0.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.2-h25fd6f3_2.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/markupsafe-3.0.3-py314h67df5f8_1.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_3.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/openssl-3.6.1-h35e630c_1.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/python-3.14.3-h32b2ec7_101_cp314.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/pyyaml-6.0.3-py314h67df5f8_1.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/readline-8.3-h853b02a_0.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.13-noxft_h366c992_103.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/watchdog-6.0.0-py314h9e666f3_3.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/yaml-0.2.5-h280c20c_3.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.7-hb78ec9c_6.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/babel-2.18.0-pyhcf101f3_1.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/backports.zstd-1.3.0-py314h680f03e_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/backrefs-6.2-pyhd8ed1ab_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/beautifulsoup4-4.14.3-pyha770c72_0.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/brotli-python-1.2.0-py314h3de4e8d_1.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hda65f42_9.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2026.2.25-hbd8a1cb_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/certifi-2026.2.25-pyhd8ed1ab_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/charset-normalizer-3.4.6-pyhd8ed1ab_0.conda
@@ -30,25 +54,12 @@ environments:
- conda: https://conda.anaconda.org/conda-forge/noarch/h2-4.3.0-pyhcf101f3_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/hpack-4.1.0-pyhd8ed1ab_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/hyperframe-6.1.0-pyhd8ed1ab_0.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/icu-78.3-h33c6efd_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/idna-3.11-pyhd8ed1ab_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/importlib-metadata-8.8.0-pyhcf101f3_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/iniconfig-2.3.0-pyhd8ed1ab_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/jinja2-3.1.6-pyhcf101f3_1.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/jsbeautifier-1.15.4-pyhd8ed1ab_0.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.45.1-default_hbd61a6d_102.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.7.5-hecca717_0.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/libffi-3.5.2-h3435931_0.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.2.0-he0feb66_18.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.2.0-he0feb66_18.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.8.2-hb03c661_0.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/libmpdec-4.0.0-hb03c661_1.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.52.0-hf4e2dac_0.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-15.2.0-h934c35e_18.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.41.3-h5347b49_0.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.2-h25fd6f3_2.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/markdown-3.10.2-pyhcf101f3_0.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/markupsafe-3.0.3-py314h67df5f8_1.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/mergedeep-1.3.4-pyhd8ed1ab_1.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/mkdocs-1.6.1-pyhd8ed1ab_1.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/mkdocs-autorefs-1.4.4-pyhd8ed1ab_0.conda
@@ -59,8 +70,6 @@ environments:
- conda: https://conda.anaconda.org/conda-forge/noarch/mkdocs-mermaid2-plugin-1.2.3-pyhcf101f3_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/mkdocstrings-1.0.3-pyhd8ed1ab_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/mkdocstrings-python-2.0.2-pyh332efcf_0.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_3.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/openssl-3.6.1-h35e630c_1.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/packaging-26.0-pyhcf101f3_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/paginate-0.5.7-pyhd8ed1ab_1.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/pathspec-1.0.4-pyhd8ed1ab_0.conda
@@ -70,34 +79,25 @@ environments:
- conda: https://conda.anaconda.org/conda-forge/noarch/pymdown-extensions-10.21.2-pyhd8ed1ab_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/pysocks-1.7.1-pyha55dd90_7.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/pytest-9.0.2-pyhcf101f3_0.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/python-3.14.3-h32b2ec7_101_cp314.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/python-dateutil-2.9.0.post0-pyhe01879c_2.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/python_abi-3.14-8_cp314.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/pyyaml-6.0.3-py314h67df5f8_1.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/pyyaml-env-tag-1.1-pyhd8ed1ab_0.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/readline-8.3-h853b02a_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/requests-2.33.0-pyhcf101f3_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/setuptools-82.0.1-pyh332efcf_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/six-1.17.0-pyhe01879c_1.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/smmap-5.0.2-pyhd8ed1ab_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/soupsieve-2.8.3-pyhd8ed1ab_0.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.13-noxft_h366c992_103.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/tomli-2.4.1-pyhcf101f3_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/typing-extensions-4.15.0-h396c80c_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/typing_extensions-4.15.0-pyhcf101f3_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/tzdata-2025c-hc9c84f9_1.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/urllib3-2.6.3-pyhd8ed1ab_0.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/watchdog-6.0.0-py314h9e666f3_3.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/yaml-0.2.5-h280c20c_3.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/zipp-3.23.0-pyhcf101f3_1.conda
- - conda: https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.7-hb78ec9c_6.conda
osx-arm64:
- conda: https://conda.anaconda.org/conda-forge/noarch/babel-2.18.0-pyhcf101f3_1.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/backports.zstd-1.3.0-py314h680f03e_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/backrefs-6.2-pyhd8ed1ab_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/beautifulsoup4-4.14.3-pyha770c72_0.conda
- - conda: https://conda.anaconda.org/conda-forge/osx-arm64/brotli-python-1.2.0-py314h3daef5d_1.conda
- - conda: https://conda.anaconda.org/conda-forge/osx-arm64/bzip2-1.0.8-hd037594_9.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2026.2.25-hbd8a1cb_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/certifi-2026.2.25-pyhd8ed1ab_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/charset-normalizer-3.4.6-pyhd8ed1ab_0.conda
@@ -114,21 +114,12 @@ environments:
- conda: https://conda.anaconda.org/conda-forge/noarch/h2-4.3.0-pyhcf101f3_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/hpack-4.1.0-pyhd8ed1ab_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/hyperframe-6.1.0-pyhd8ed1ab_0.conda
- - conda: https://conda.anaconda.org/conda-forge/osx-arm64/icu-78.3-hef89b57_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/idna-3.11-pyhd8ed1ab_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/importlib-metadata-8.8.0-pyhcf101f3_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/iniconfig-2.3.0-pyhd8ed1ab_0.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/jinja2-3.1.6-pyhcf101f3_1.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/jsbeautifier-1.15.4-pyhd8ed1ab_0.conda
- - conda: https://conda.anaconda.org/conda-forge/osx-arm64/libcxx-22.1.2-h55c6f16_0.conda
- - conda: https://conda.anaconda.org/conda-forge/osx-arm64/libexpat-2.7.5-hf6b4638_0.conda
- - conda: https://conda.anaconda.org/conda-forge/osx-arm64/libffi-3.5.2-hcf2aa1b_0.conda
- - conda: https://conda.anaconda.org/conda-forge/osx-arm64/liblzma-5.8.2-h8088a28_0.conda
- - conda: https://conda.anaconda.org/conda-forge/osx-arm64/libmpdec-4.0.0-h84a0fba_1.conda
- - conda: https://conda.anaconda.org/conda-forge/osx-arm64/libsqlite-3.52.0-h1ae2325_0.conda
- - conda: https://conda.anaconda.org/conda-forge/osx-arm64/libzlib-1.3.2-h8088a28_2.conda
- conda: https://conda.anaconda.org/conda-forge/noarch/markdown-3.10.2-pyhcf101f3_0.conda
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- license_family: BSD
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md5: 0481bfd9814bf525bd4b3ee4b51494c4
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license_family: BSD
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md5: 71b24316859acd00bdb8b38f5e2ce328
@@ -1544,19 +1642,6 @@ packages:
license: LicenseRef-MicrosoftWindowsSDK10
size: 694692
timestamp: 1756385147981
-- conda: https://conda.anaconda.org/conda-forge/noarch/urllib3-2.6.3-pyhd8ed1ab_0.conda
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- depends:
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- - brotli-python >=1.2.0
- - h2 >=4,<5
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- - python >=3.10
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- conda: https://conda.anaconda.org/conda-forge/win-64/vc-14.3-h41ae7f8_34.conda
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md5: 1e610f2416b6acdd231c5f573d754a0f
@@ -1591,30 +1676,6 @@ packages:
license_family: Proprietary
size: 115235
timestamp: 1767320173250
-- conda: https://conda.anaconda.org/conda-forge/linux-64/watchdog-6.0.0-py314h9e666f3_3.conda
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- - pyyaml >=3.10
- - python_abi 3.14.* *_cp314
- license: Apache-2.0
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-- conda: https://conda.anaconda.org/conda-forge/osx-arm64/watchdog-6.0.0-py314ha14b1ff_3.conda
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- depends:
- - python
- - pyyaml >=3.10
- - python 3.14.* *_cp314
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- - python_abi 3.14.* *_cp314
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md5: fb3b994d1855ef29ec5c49dc02708384
@@ -1626,34 +1687,6 @@ packages:
license_family: APACHE
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diff --git a/pixi.toml b/pixi.toml
index 1b4605f..fc3f54e 100644
--- a/pixi.toml
+++ b/pixi.toml
@@ -18,3 +18,4 @@ mkdocstrings = ">=1.0.3"
mkdocs-mermaid2-plugin = ">=1.2.3"
mkdocstrings-python = ">=2.0.2"
pytest = ">=9.0.2"
+mkdocs-autorefs = ">=1.4.4,<2"
diff --git a/resources/shapes/README.md b/resources/shapes/README.md
deleted file mode 100644
index 44ea1d6..0000000
--- a/resources/shapes/README.md
+++ /dev/null
@@ -1,9 +0,0 @@
-# Shapes
-
-Lightweight [GeoParquet](https://geoparquet.org/) files to be used for light testing of components.
-Generated using [Natural Earth](naturalearthdata.com) data.
-
-
-- **mne_admin0.parquet**: Montenegro at a country-level resolution (i.e., a single shape). Recommended for lightweight testing.
-- **prt_admin1.parquet**: Portugal at a regional resolution (20 sub-regions). Recommended for light to medium testing.
-
diff --git a/tests/data_module_test/docs_test.py b/tests/data_module_test/docs_test.py
index 4ea0a84..0498d13 100644
--- a/tests/data_module_test/docs_test.py
+++ b/tests/data_module_test/docs_test.py
@@ -4,7 +4,7 @@
def test_mkdocs_builds(tmp_path, pytestconfig):
- """Run a basic check on the"""
+ """Basic check to see if the docs build."""
project_root = pytestconfig.rootpath
result = subprocess.run(
From 345dd07b57b18b9d4a0e346315c9fa83d45425e3 Mon Sep 17 00:00:00 2001
From: Ivan Ruiz Manuel <72193617+irm-codebase@users.noreply.github.com>
Date: Mon, 13 Jul 2026 13:49:54 +0200
Subject: [PATCH 02/20] Add intro page
---
docs/index.md | 32 ++++++++++++++++++++++++--------
mkdocs.yaml | 2 ++
2 files changed, 26 insertions(+), 8 deletions(-)
diff --git a/docs/index.md b/docs/index.md
index 4766520..79618b9 100644
--- a/docs/index.md
+++ b/docs/index.md
@@ -1,16 +1,32 @@
# Home
-Welcome to the [`modelblocks`](https://www.modelblocks.org/) documentation!
-Our main purpose is enabling energy researchers and institutions to share, reuse and improve the data workflows used to construct Energy System Models in a decentralised way.
-We aim to do this by providing an expanding collection of high-quality modular workflows used for peer-reviewed research, inspired by `snakemake`'s [workflow catalog](https://snakemake.github.io/snakemake-workflow-catalog/).
+Welcome to the **Modelblocks** documentation!
-We wish to turn very complex models that are hard to maintain and reuse into a range of digestible, well supported tools that get better and better over time!
+**Modelblocks** is a collection of reusable, composable data modules for energy system modelling.
+Each module is a self-contained `snakemake` workflow that turns raw data into harmonised, model-ready datasets, and can be dropped into any larger workflow.
+This documentation is meant to guide users and developers on how to follow our Convention.
-
+??? info "Looking for details on available modules?"
-Learn about the full list of available [modules](./Modules/modules.md).
+ Please consult the official [Modelblocks website](https://www.modelblocks.org/) for a full list of **core** and **community** developed modules.
-## For developers
-If you want to start creating your own data modules, check out our [developer guidelines](./Developer_guidelines/getting_started.md).
+
+
+- :fontawesome-solid-rocket:{ .lg .middle } __Using Modelblocks__
+
+ * [Setting up](user/setup.md): get all the necessary tools installed and ready to use.
+ * [Background](user/background.md): a brief overview on what Modelblocks is trying to solve.
+ * [Basic concepts](user/concepts.md): understand the core concepts behind Modelblocks.
+ * [Examples & tutorials](user/examples.md): how to quickly use and configure modules.
+
+- :fontawesome-solid-book:{ .lg .middle } __Development Conventions__
+
+ * [Development tools](developer/setup.md): getting started with development.
+ * [General overview](developer/overview.md): general rules on how to ensure a workflow is truly modular
+ * [Convention requirements](developer/convention.md): in depth convention requirements.
+ * [Best practices](developer/index.md): our preferences for long-lived, successful modules.
+
+
+
diff --git a/mkdocs.yaml b/mkdocs.yaml
index d460e0a..3d55763 100644
--- a/mkdocs.yaml
+++ b/mkdocs.yaml
@@ -115,6 +115,8 @@ plugins:
- search
nav:
- Home: index.md
+ - Getting started:
+ - getting_started/installation.md
- Background:
- Background/motivation.md
- Background/our_framework.md
From c59d52867beef22a4637afbcd4a07a68ae03dae5 Mon Sep 17 00:00:00 2001
From: Ivan Ruiz Manuel <72193617+irm-codebase@users.noreply.github.com>
Date: Mon, 13 Jul 2026 16:55:45 +0200
Subject: [PATCH 03/20] Add user setup
---
docs/Background/our_framework.md | 2 +-
docs/css/extra.css | 11 +++++++
docs/developing/index.md | 15 +++++++++
docs/index.md | 14 +++-----
docs/user/index.md | 24 ++++++++++++++
docs/user/setup.md | 55 ++++++++++++++++++++++++++++++++
mkdocs.yaml | 3 ++
7 files changed, 113 insertions(+), 11 deletions(-)
create mode 100644 docs/developing/index.md
create mode 100644 docs/user/index.md
create mode 100644 docs/user/setup.md
diff --git a/docs/Background/our_framework.md b/docs/Background/our_framework.md
index ed19e42..2163aa5 100644
--- a/docs/Background/our_framework.md
+++ b/docs/Background/our_framework.md
@@ -34,7 +34,7 @@ A higher focus is put on following [FAIR principles](https://www.go-fair.org/fai
### Data modules
-These are topic-specific data-generating [`snakemake`](https://snakemake.github.io/) workflows that can be configured to produce case-specific data, allowing users to tune certain assumptions via configuration files or by through input data. These modules follow a commonly agreed input/output structure, their methodology is well documented, and they rely on datasets and software libraries that are trustworthy and stable. This is achieved through a standardised template that all data modules must follow.
+These are topic-specific data-generating [`Snakemake`](https://snakemake.github.io/) workflows that can be configured to produce case-specific data, allowing users to tune certain assumptions via configuration files or by through input data. These modules follow a commonly agreed input/output structure, their methodology is well documented, and they rely on datasets and software libraries that are trustworthy and stable. This is achieved through a standardised template that all data modules must follow.
??? info "Interfacing"
diff --git a/docs/css/extra.css b/docs/css/extra.css
index 97c5d95..014ff0c 100644
--- a/docs/css/extra.css
+++ b/docs/css/extra.css
@@ -57,3 +57,14 @@
margin-bottom: 0;
margin-top: 0;
}
+
+/* Make card links cover the entire grid card. */
+.md-typeset .grid.cards > ul > li {
+ position: relative;
+}
+
+.md-typeset .grid.cards a.card-link::after {
+ position: absolute;
+ inset: 0;
+ content: "";
+}
diff --git a/docs/developing/index.md b/docs/developing/index.md
new file mode 100644
index 0000000..29c7366
--- /dev/null
+++ b/docs/developing/index.md
@@ -0,0 +1,15 @@
+# Developing Modelblocks
+
+This section explains the necessary steps to import, reconfigure and execute a Modelblocks module in a `Snakemake` workflow.
+If you are new to `Snakemake` workflows, we recommend familiarising yourself with the [`Snakemake` documentation](https://snakemake.readthedocs.io/en/stable/) first.
+
+
+
+- :fontawesome-solid-book:{ .lg .middle } __How to develop a module__
+
+ * [Installation](developer/setup.md): getting started with development.
+ * [General overview](developer/overview.md): general rules on how to ensure a workflow is truly modular
+ * [Convention requirements](developer/convention.md): in depth convention requirements.
+ * [Best practices](developer/index.md): our preferences for long-lived, successful modules.
+
+
diff --git a/docs/index.md b/docs/index.md
index 79618b9..681d4d4 100644
--- a/docs/index.md
+++ b/docs/index.md
@@ -4,7 +4,7 @@
Welcome to the **Modelblocks** documentation!
**Modelblocks** is a collection of reusable, composable data modules for energy system modelling.
-Each module is a self-contained `snakemake` workflow that turns raw data into harmonised, model-ready datasets, and can be dropped into any larger workflow.
+Each module is a self-contained `Snakemake` workflow that turns raw data into harmonised, model-ready datasets, and can be dropped into any larger workflow.
This documentation is meant to guide users and developers on how to follow our Convention.
??? info "Looking for details on available modules?"
@@ -16,17 +16,11 @@ This documentation is meant to guide users and developers on how to follow our C
- :fontawesome-solid-rocket:{ .lg .middle } __Using Modelblocks__
- * [Setting up](user/setup.md): get all the necessary tools installed and ready to use.
- * [Background](user/background.md): a brief overview on what Modelblocks is trying to solve.
- * [Basic concepts](user/concepts.md): understand the core concepts behind Modelblocks.
- * [Examples & tutorials](user/examples.md): how to quickly use and configure modules.
+ [Start here](./user/index.md) if you want to use Modelblocks modules in your own research.
-- :fontawesome-solid-book:{ .lg .middle } __Development Conventions__
+- :fontawesome-solid-screwdriver-wrench:{ .lg .middle } __Development Conventions__
- * [Development tools](developer/setup.md): getting started with development.
- * [General overview](developer/overview.md): general rules on how to ensure a workflow is truly modular
- * [Convention requirements](developer/convention.md): in depth convention requirements.
- * [Best practices](developer/index.md): our preferences for long-lived, successful modules.
+ [Start here](./user/index.md) if you want to follow the Modelblocks Convention to share your research as a reproducible workflow.
diff --git a/docs/user/index.md b/docs/user/index.md
new file mode 100644
index 0000000..3ba66d3
--- /dev/null
+++ b/docs/user/index.md
@@ -0,0 +1,24 @@
+# Using Modelblocks
+
+This section explains the necessary steps to import, reconfigure and execute a Modelblocks module in a `Snakemake` workflow.
+If you are new to `Snakemake` workflows, we recommend familiarising yourself with the [`Snakemake` documentation](https://snakemake.readthedocs.io/en/stable/) first.
+
+
+
+- :fontawesome-solid-cubes:{ .lg .middle } __[Setting up](setup.md){ .card-link }__
+
+ How to install all the necessary tools to be ready to use Modelblocks.
+
+- :fontawesome-solid-cubes:{ .lg .middle } __[Background info](./background.md){ .card-link }__
+
+ A general overview behind Modelblock's ideology and the problems it is tyring to solve.
+
+- :fontawesome-solid-cubes:{ .lg .middle } __[Basic concepts](./basics.md){ .card-link }__
+
+ General concepts behind Modelblocks and how to use modular workflows.
+
+- :fontawesome-solid-cubes:{ .lg .middle } __[Examples and tutorials](./examples.md){ .card-link }__
+
+ In depth examples.
+
+
diff --git a/docs/user/setup.md b/docs/user/setup.md
new file mode 100644
index 0000000..334830b
--- /dev/null
+++ b/docs/user/setup.md
@@ -0,0 +1,55 @@
+# Setting up
+
+Modelblocks relies on a core set of tools to ensure modules can be run on most platforms.
+This section details which these tools are, why they are needed, and how to install them.
+
+## Software environments: `pixi` or `miniconda`
+
+
+Modelblocks modules rely on [`Snakemake`](https://snakemake.readthedocs.io/en/stable/index.html) for environment management and software execution.
+`Snakemake` can be installed using either `pixi` or `miniconda`.
+In general, we highly recommend `pixi`, as it is a faster and more modern tool.
+
+???+ info "Setting up a project with `pixi`"
+
+ Follow the installation instructions on the [`pixi` documentation](https://pixi.prefix.dev/latest/).
+
+ Once installed:
+
+ ```shell
+ # Create and open your project directory
+ pixi init my_project & cd my_project
+ # Install snakemake at the project level
+ pixi workspace channel add conda-forge bioconda
+ pixi add snakemake-minimal conda
+ ```
+
+
+??? info "Setting up a project with `conda`"
+
+ Follow the installation instructions on the [`conda` documenation](https://docs.conda.io/en/latest/).
+ We recommend `miniconda` for a lightweight, minimal installation.
+
+ Once installed:
+
+ ```shell
+ # Create and open your project directory
+ mkdir ./my_project & cd ./my_project
+ # Create a conda environment for your project
+ conda create -n my_project -c conda-forge -c bioconda --strict-channel-priority snakemake-minimal
+ conda activate my_project
+ ```
+
+## Project templating: Modelblocks or `Snakemake` standards
+
+To setup your `Snakemake` project structure, we recommend using [our own project template](https://github.com/modelblocks-org/data-module-template) (using `pixi`) or the [official `Snakemake` template](https://github.com/snakemake-workflows/snakemake-workflow-template) (using `conda`).
+Instructions for either template are available in their respective repositories.
+
+??? info "What is the difference?"
+
+ Both templates have a very similar structure, and will result in a well organised project.
+ However, the Modelblocks version offers some additional advantages:
+
+ - More modern setup.
+ - Automated templated generation and updates via [`copier`](https://copier.readthedocs.io/en/stable/).
+ - Tuned for modularisation, making it easier to convert your project to a Modelblocks module in the future.
diff --git a/mkdocs.yaml b/mkdocs.yaml
index 3d55763..419571f 100644
--- a/mkdocs.yaml
+++ b/mkdocs.yaml
@@ -115,6 +115,9 @@ plugins:
- search
nav:
- Home: index.md
+ - Using Modelblocks:
+ - user/index.md
+ - user/setup.md
- Getting started:
- getting_started/installation.md
- Background:
From 24940031f8b1b6f0bea4bfe6c607905fbe4b9c48 Mon Sep 17 00:00:00 2001
From: Ivan Ruiz Manuel <72193617+irm-codebase@users.noreply.github.com>
Date: Mon, 13 Jul 2026 23:28:53 +0200
Subject: [PATCH 04/20] Add background
---
.../images/bloat-growth-problem.png | Bin 343917 -> 0 bytes
docs/css/extra.css | 8 +++
docs/{developing => developer}/index.md | 0
docs/index.md | 8 +--
docs/user/background.md | 48 ++++++++++++++++++
docs/user/images/bloat.drawio.png | Bin 0 -> 158995 bytes
docs/{ => user}/images/modular.png | Bin
docs/{ => user}/images/not_modular.png | Bin
.../images/toolset_simple.drawio.png | Bin
mkdocs.yaml | 1 +
10 files changed, 61 insertions(+), 4 deletions(-)
delete mode 100644 docs/Background/images/bloat-growth-problem.png
rename docs/{developing => developer}/index.md (100%)
create mode 100644 docs/user/background.md
create mode 100644 docs/user/images/bloat.drawio.png
rename docs/{ => user}/images/modular.png (100%)
rename docs/{ => user}/images/not_modular.png (100%)
rename docs/{Background => user}/images/toolset_simple.drawio.png (100%)
diff --git a/docs/Background/images/bloat-growth-problem.png b/docs/Background/images/bloat-growth-problem.png
deleted file mode 100644
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