Rename 'Click To Enter New Patient' button to 'Enter New Patient'

.dockerignore

@@ -0,0 +1,3 @@
+server/.gitignore
+server/Dockerfile
+server/entrypoint.sh

.github/FUNDING.yml

@@ -0,0 +1,15 @@
+# These are supported funding model platforms
+
+github: [sahilds1] # Replace with up to 4 GitHub Sponsors-enabled usernames e.g., [user1, user2]
+patreon: # Replace with a single Patreon username
+open_collective: # Replace with a single Open Collective username
+ko_fi: # Replace with a single Ko-fi username
+tidelift: # Replace with a single Tidelift platform-name/package-name e.g., npm/babel
+community_bridge: # Replace with a single Community Bridge project-name e.g., cloud-foundry
+liberapay: # Replace with a single Liberapay username
+issuehunt: # Replace with a single IssueHunt username
+lfx_crowdfunding: # Replace with a single LFX Crowdfunding project-name e.g., cloud-foundry
+polar: # Replace with a single Polar username
+buy_me_a_coffee: # Replace with a single Buy Me a Coffee username
+thanks_dev: # Replace with a single thanks.dev username
+custom: # Replace with up to 4 custom sponsorship URLs e.g., ['link1', 'link2']

.github/ISSUE_TEMPLATE/issue.md

@@ -0,0 +1,32 @@
+---
+name: Issue template
+about: Help push the project forward
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+## Title
+<!-- Title: [Type]: Short description of the problem or goal  -->
+
+## Background
+<!-- Why does this change need to happen? -->
+
+## Existing Behavior
+<!-- What code or docs are changing? Link or paste as needed -->
+
+## Acceptance Criteria
+- [] <!-- What does done look like? -->
+
+## Approach
+<!-- How are you tackling this? Update as you go -->
+
+## References
+<!-- Anything useful — docs, links, decisions -->
+
+## Risks and Rollback
+<!-- Anything that could go wrong, or leave blank if low risk -->
+
+## Screenshots / Recordings
+<!-- Before/after visuals or console output if helpful -->

.github/workflows/containers-publish.yml

@@ -1,8 +1,10 @@
 name: "Containers: Publish"
 
 on:
+  release:
+    types: [published]
   push:
-    tags: ["v*"]
+    branches: [develop]
 
 permissions:
   packages: write
@@ -12,10 +14,10 @@ jobs:
     name: Build and Push
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - name: Login to ghcr.io Docker registry
-        uses: docker/login-action@v2
+        uses: docker/login-action@v3
         with:
           registry: ghcr.io
           username: ${{ github.repository_owner }}
@@ -24,7 +26,18 @@ jobs:
       - name: Compute Docker container image addresses
         run: |
           DOCKER_REPOSITORY="ghcr.io/${GITHUB_REPOSITORY,,}"
-          DOCKER_TAG="${GITHUB_REF:11}"
+          git fetch --tags --force
+
+          if [[ "${{ github.event_name }}" == "release" ]]; then
+            TAG="${GITHUB_REF#refs/tags/}"
+            DOCKER_TAG="${TAG#v}"
+          else
+            # Pre-release for develop
+            BASE_TAG=$(git describe --tags --abbrev=0 2>/dev/null || echo "v0.0.0")
+            VERSION="${BASE_TAG#v}"
+            TIMESTAMP=$(date +%Y%m%d%H%M%S)
+            DOCKER_TAG="${VERSION}-dev.${TIMESTAMP}"
+          fi
 
           echo "DOCKER_REPOSITORY=${DOCKER_REPOSITORY}" >> $GITHUB_ENV
           echo "DOCKER_TAG=${DOCKER_TAG}" >> $GITHUB_ENV
@@ -34,36 +47,30 @@ jobs:
       # - name: 'Pull previous Docker container image: :latest'
       #   run: docker pull "${DOCKER_REPOSITORY}:latest" || true
 
-      - name: "Pull previous Docker container image: frontend-static:latest"
-        run: docker pull "${DOCKER_REPOSITORY}/frontend-static:latest" || true
+      - name: "Pull previous Docker container image: app:latest"
+        run: docker pull "${DOCKER_REPOSITORY}/app:latest" || true
 
-      - name: "Build Docker container image: frontend-static:latest"
+      - name: "Build Docker container image: app:latest"
         run: |
           docker build \
-              --cache-from "${DOCKER_REPOSITORY}/frontend-static:latest" \
-              --file frontend/Dockerfile.demo \
-              --build-arg SERVER_NAME=localhost \
-              --tag "${DOCKER_REPOSITORY}/frontend-static:latest" \
-              --tag "${DOCKER_REPOSITORY}/frontend-static:${DOCKER_TAG}" \
-              frontend
-      - name: "Push Docker container image frontend-static:latest"
-        run: docker push "${DOCKER_REPOSITORY}/frontend-static:latest"
+              --cache-from "${DOCKER_REPOSITORY}/app:latest" \
+              --file Dockerfile.prod \
+              --tag "${DOCKER_REPOSITORY}/app:latest" \
+              --tag "${DOCKER_REPOSITORY}/app:${DOCKER_TAG}" \
+              --build-arg VERSION="${DOCKER_TAG}" \
+              .
 
-      - name: "Push Docker container image frontend-static:v*"
-        run: docker push "${DOCKER_REPOSITORY}/frontend-static:${DOCKER_TAG}"
-#
-#
-#    - name: 'Build Docker container image: backend:latest'
-#      run: |
-#        cd backend && \
-#        make && \
-#        docker image tag "${DOCKER_REPOSITORY}/backend/local:latest" "${DOCKER_REPOSITORY}/backend:latest"
-#
-#    - name: Push Docker container image backend:latest
-#      run: docker push "${DOCKER_REPOSITORY}/backend:latest"
-#
-#    - name: Push Docker container image backend:v*
-#      run: docker push "${DOCKER_REPOSITORY}/backend:${DOCKER_TAG}"
+      - name: "Push Docker container image app:latest"
+        run: docker push "${DOCKER_REPOSITORY}/app:latest"
 
-# - name: Push Docker container image :v*"
-#   run: docker push "${DOCKER_REPOSITORY}:${DOCKER_TAG}"
+      - name: "Push Docker container image app:v*"
+        run: docker push "${DOCKER_REPOSITORY}/app:${DOCKER_TAG}"
+
+      - name: Save Docker Tag
+        run: echo "${DOCKER_TAG}" > docker_tag.txt
+
+      - name: Upload Docker Tag
+        uses: actions/upload-artifact@v4
+        with:
+          name: docker-tag
+          path: docker_tag.txt

.github/workflows/frontend-ci.yml

@@ -0,0 +1,35 @@
+name: "Frontend: Lint and Build"
+
+on:
+  push:
+    branches: [develop]
+  pull_request:
+    branches: [develop]
+
+jobs:
+  frontend:
+    name: Lint and Build
+    runs-on: ubuntu-latest
+    defaults:
+      run:
+        working-directory: frontend
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Node.js
+        uses: actions/setup-node@v4
+        with:
+          node-version: "18"
+          cache: "npm"
+          cache-dependency-path: frontend/package-lock.json
+
+      - name: Install dependencies
+        run: npm ci --legacy-peer-deps
+
+      - name: Lint
+        run: npm run lint
+        continue-on-error: true
+
+      - name: Build
+        run: npm run build
+        continue-on-error: true

.gitignore

@@ -1,3 +1,4 @@
-config/*
+config/env/*
+!config/env/*.example
 .idea/
-env*
+.DS_Store

CHANGELOG.md

@@ -0,0 +1,165 @@
+# Changelog
+
+All notable changes to this project will be documented in this file.
+
+The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
+and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+
+## [Unreleased]
+
+### Added
+- **Conditional PDF Access Based on Authentication** (2025-01-XX)
+  - Logged-in users see "View PDF" button that opens PDF viewer in new tab
+  - Non-logged-in users see "Download PDF" button that directly downloads the file
+  - Backend: Added `upload_file_guid` field to risk/source API responses
+  - Frontend: Conditional rendering based on Redux authentication state
+  - Fallback GUID extraction from URL if backend field is missing
+
+  **Backend Changes:**
+
+  *File: `server/api/views/risk/views_riskWithSources.py`*
+  ```python
+  # Added to source_info dictionary in 3 locations (lines ~138, ~252, ~359):
+  source_info = {
+      'filename': filename,
+      'title': getattr(embedding, 'title', None),
+      'publication': getattr(embedding, 'publication', ''),
+      'text': getattr(embedding, 'text', ''),
+      'rule_type': medrule.rule_type,
+      'history_type': medrule.history_type,
+      'upload_fileid': getattr(embedding, 'upload_file_id', None),
+      'page': getattr(embedding, 'page_num', None),
+      'link_url': self._build_pdf_link(embedding),
+      'upload_file_guid': str(embedding.upload_file.guid) if embedding.upload_file else None  # NEW
+  }
+  ```
+
+  **Frontend Changes:**
+
+  *File: `frontend/src/pages/PatientManager/PatientManager.tsx`*
+  ```typescript
+  // Added imports:
+  import { useSelector } from "react-redux";
+  import { RootState } from "../../services/actions/types";
+
+  // Added hook to get auth state:
+  const { isAuthenticated } = useSelector((state: RootState) => state.auth);
+
+  // Passed to PatientSummary:
+  <PatientSummary
+    // ... existing props
+    isAuthenticated={isAuthenticated}
+  />
+  ```
+
+  *File: `frontend/src/pages/PatientManager/PatientSummary.tsx`*
+  ```typescript
+  // Updated interface:
+  interface PatientSummaryProps {
+    // ... existing props
+    isAuthenticated?: boolean;  // NEW
+  }
+
+  // Updated SourceItem type:
+  type SourceItem = {
+    // ... existing fields
+    upload_file_guid?: string | null;  // NEW
+  };
+
+  // Added helper function:
+  const extractGuidFromUrl = (url: string): string | null => {
+    try {
+      const urlObj = new URL(url, window.location.origin);
+      return urlObj.searchParams.get('guid');
+    } catch {
+      return null;
+    }
+  };
+
+  // Updated component:
+  const PatientSummary = ({
+    // ... existing props
+    isAuthenticated = false,  // NEW
+  }: PatientSummaryProps) => {
+    const baseURL = import.meta.env.VITE_API_BASE_URL || '';  // NEW
+
+  // Updated MedicationItem props:
+  const MedicationItem = ({
+    // ... existing props
+    isAuthenticated,  // NEW
+    baseURL,  // NEW
+  }: {
+    // ... existing types
+    isAuthenticated: boolean;  // NEW
+    baseURL: string;  // NEW
+  }) => {
+
+  // Updated MedicationTier props:
+  const MedicationTier = ({
+    // ... existing props
+    isAuthenticated,  // NEW
+    baseURL,  // NEW
+  }: {
+    // ... existing types
+    isAuthenticated: boolean;  // NEW
+    baseURL: string;  // NEW
+  }) => (
+    // ... passes to MedicationItem
+    <MedicationItem
+      // ... existing props
+      isAuthenticated={isAuthenticated}
+      baseURL={baseURL}
+    />
+  );
+
+  // Conditional button rendering:
+  {s.link_url && (() => {
+    const guid = s.upload_file_guid || extractGuidFromUrl(s.link_url);
+    if (!guid) return null;
+
+    return isAuthenticated ? (
+      <a
+        href={s.link_url}
+        target="_blank"
+        rel="noopener noreferrer"
+        className="ml-2 px-2 py-1 text-xs bg-blue-100 text-blue-700 rounded hover:bg-blue-200 transition-colors"
+      >
+        View PDF
+      </a>
+    ) : (
+      <a
+        href={`${baseURL}/v1/api/uploadFile/${guid}`}
+        download
+        className="ml-2 px-2 py-1 text-xs bg-green-100 text-green-700 rounded hover:bg-green-200 transition-colors"
+      >
+        Download PDF
+      </a>
+    );
+  })()}
+
+  // Updated all MedicationTier calls to pass new props:
+  <MedicationTier
+    // ... existing props
+    isAuthenticated={isAuthenticated}
+    baseURL={baseURL}
+  />
+  ```
+
+### Fixed
+- **URL Route Case Consistency** (2025-01-XX)
+  - Fixed case mismatch between backend URL generation (`/drugsummary`) and frontend route (`/drugSummary`)
+  - Updated all references to use consistent camelCase `/drugSummary` route
+  - Affected files: `views_riskWithSources.py`, `Layout_V2_Sidebar.tsx`, `Layout_V2_Header.tsx`, `FileRow.tsx`
+
+- **Protected Route Authentication Flow** (2025-01-XX)
+  - Fixed blank page issue when opening protected routes in new tab
+  - `ProtectedRoute` now waits for authentication check to complete before redirecting
+  - Added `useAuth()` hook to `Layout_V2_Main` to trigger auth verification
+
+### Changed
+- **PatientSummary Component** (2025-01-XX)
+  - Now receives `isAuthenticated` prop from Redux state
+  - Props passed through component hierarchy: `PatientManager` → `PatientSummary` → `MedicationTier` → `MedicationItem`
+  - Added `baseURL` constant for API endpoint construction
+
+## [Previous versions would go here]