v2.0.0-alpha.3

Full Changelog: v2.0.0-alpha.2...v2.0.0-alpha.3

2.0.0-alpha.2

Full Changelog: v2.0.0-alpha.1...v2.0.0-alpha.2

v2.0.0-alpha.1

This release is the first alpha for a fully restructured Python and CLI API. The new version also completely switches from Tensorflow to PyTorch.

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Changed

Added

• New modular architecture subpackage for activations, blocks, callbacks, helpers, and losses.
• GitHub Actions test workflow for linting, formatting, type checking, and multi-version testing.
• Broader test coverage across the refactored API.

Changed

• Refactored the package API for IM2Deep 2.0, including a simplified __init__.py and improved version handling.
• Reorganized the codebase into clearer modules for core functionality, calibration, model operations, and architecture components.
• Expanded the documentation with clearer installation, usage, CLI, Python API, calibration, and output guidance.
• Updated development workflows to use uv, ruff, and improved CI caching and artifact handling.
• Refactored the publishing workflow to separate build and publish stages.
• Simplified dependencies, including fully switching to PyTorch over previous Tensorflow with optional PyTorch dependency.

Removed

• Legacy imports, outdated modules, and obsolete model files.
• Custom exceptions from the package entry point.
• The NumPy version pin.

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Full Changelog: v1.2.0...v2.0.0-alpha.1

v1.2.0

What's Changed

• Remove Numpy version pin; general linting and typing updates by @RalfG in #17

Full Changelog: v1.1.1...v1.2.0

v1.1.1

What's Changed

• Fix MS2Rescore compatibility (calibration data typing) by @rodvrees in #15

Full Changelog: v1.1.0...v1.1.1

v1.1.0

What's Changed

• Update-docs-model by @rodvrees in #13

Full Changelog: v1.0.3...v1.1.0

v1.0.3

What's Changed

• Fix running with no calibration by @rodvrees in #11

Full Changelog: v1.0.2...v1.0.3

v1.0.2

What's Changed

• Fix write_output=False bug by @rodvrees in #9

Full Changelog: v1.0.1...v1.0.2

v1.0.1

Bump version

v1.0.0

What's Changed

• Addition of multiconformer prediction model and functionality by @rodvrees in #8
• Improve docs and functionality by @rodvrees in #3

Full Changelog: v0.3.1...v1.0.0