Search results

Mark duplicated reads on sorted bam

Status: Open.

#60 In GregoryFaust/samblaster;

· Neo-xbx-00 opened on Jan 26, 2026

de-duplicating a large sam file

Status: Open.

#59 In GregoryFaust/samblaster;

· morien opened on Aug 2, 2024

Can't find first and/or second of pair in sam block of length

Status: Open.

#58 In GregoryFaust/samblaster;

· CaroleBelliardo opened on Aug 2, 2023

Aligning in Biscuit with samblaster and samtools

Status: Open.

#57 In GregoryFaust/samblaster;

· KChadwick78 opened on Jul 12, 2023

Duplicates were removed but log says 0 dups removed

Status: Open.

#55 In GregoryFaust/samblaster;

· sehawk opened on Jan 4, 2023

Please adapt the metrics

Status: Open.

#52 In GregoryFaust/samblaster;

· ToVste opened on Jun 7, 2021

Option to remove split and disc alignments?

Status: Open.

#51 In GregoryFaust/samblaster;

· biobenkj opened on May 6, 2021

Alpine-based docker build fails

Status: Open.

#49 In GregoryFaust/samblaster;

· felixfrenkel opened on Nov 17, 2020

walltime is twice cpu seconds

Status: Open.

#48 In GregoryFaust/samblaster;

· jsmedmar opened on Oct 21, 2020

can samblaster tackle reads with UMI?

Status: Open.

#47 In GregoryFaust/samblaster;

· windtalker6 opened on Sep 16, 2020

Can't find first and/or second of pair error

Status: Open.

#45 In GregoryFaust/samblaster;

· dheerajbobbili1988 opened on May 14, 2020

Support for DT tag to distinguish PCR and optical duplicates

Status: Open.

#38 In GregoryFaust/samblaster;

· seboyden opened on Sep 27, 2018