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Add notebook for running OpenFE with OF3 generated inputs
- #266
#266
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IAlibay
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OpenFreeEnergy/ExampleNotebooks:main
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OpenFreeEnergy/ExampleNotebooks:of3_septop_example
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Nov 24, 2025
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Add notebook for running OpenFE with OF3 generated inputs
#266
IAlibay
merged 9 commits into
main
OpenFreeEnergy/ExampleNotebooks:main
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of3_septop_example
OpenFreeEnergy/ExampleNotebooks:of3_septop_example
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Commits on Nov 19, 2025
Add notebook for running SepTop with OF3 generated inputs
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Commits on Nov 20, 2025
Merge branch 'main' into of3_septop_example
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Add openfold3 outputs
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Merge branch 'of3_septop_example' of github.com:OpenFreeEnergy/ExampleNotebooks into of3_septop_example
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Commits on Nov 21, 2025
Updating OpenFold to OpenFE notebook
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fixes
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