[ana6, com8]: Add ana6Optimisation Module, apply changes in com8MoTPSA#1245
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RolandFischbacher wants to merge 37 commits into
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[ana6, com8]: Add ana6Optimisation Module, apply changes in com8MoTPSA#1245RolandFischbacher wants to merge 37 commits into
RolandFischbacher wants to merge 37 commits into
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| qlty | Structure | Function with many parameters (count = 12): plotAreaDiff | 2 |
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Squash of 20 commits from RF_com8MoTPSA branch including: - com8MoTPSA workflow improvements (chunked multiprocessing, path handling) - Bayesian optimisation integration (ana6Optimisation module) - Morris sensitivity analysis scripts - AIMEC runout reference implementation - probAna pickle saving and bounds - Plotting and config improvements
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Coverage Impact ⬇️ Merging this pull request will decrease total coverage on Modified Components (1)
Modified Files with Diff Coverage (2)
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- Add bounds to paramValuesD in createSamplesWithVariation (StandardParameters) - Add writing of visualisation scenario and sampling method to com8MoTPSACfg.ini
fso42
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Feb 26, 2026
awirb
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Mar 13, 2026
| - The top-N most influential parameters are selected for optimisation. | ||
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| Scenario 2 (Manual definition): | ||
| - No prior Morris screening. |
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If I understood correctly, Morris analysis could have been performed previously to decide which parameters should be considered in the optimisation and which ones do not have a strong effect on the loss function and are therefore not considered? So scenario 2 just means that first simulations have to be performed to start the optimisation with or used from the ana4Prob run?
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so in contrast in scenario 1 the simulations performed for the morris analysis using the morris sampling are used directly?
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Yes, the statement is correct.
| def loadVariationData(cfgOpt, outDir, avaDir): | ||
| """ | ||
| Load parameter bounds and selected parameters for optimisation. Two execution modes are supported, controlled via | ||
| cfgOpt['PARAM_BOUNDS']['scenario']: |
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in the description of the scenarios below, both say that the parameter bounds are either read from sa_parameter_bounds.pkl (scenario 1) or from paramValuesD.pickle created in the runAna4ProbAna (scenario 2) - so cfgOpt['PARAM_BOUNDS'] is not used? consider mentioning already here that this relies on previous simulation runs performed using Morris analysis or ana4ProbAna
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cfgOpt['PARAM_BOUNDS'] is used to determine which file is read, either sa_parameter_bounds.pkl or paramValuesD.pickle
| paramBounds, paramSelected = optimisationUtils.loadVariationData(cfgOpt, inDir, avalancheDir) | ||
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| # Calculate Areal indicators and AIMEC and save the results in Outputs/ana3AIMEC and Outputs/out1Peak | ||
| optimisationUtils.calcArealIndicatorsAndAimec(cfgOpt, avalancheDir, ana3AIMEC) |
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so for the areal indicators, the settings are read from cfgOpt for aimec from the aimecCfg - here we could use the override config functionality
…IMECcfg.ini settings and not pass AIMEC module for calcArealIndicatorsAndAIMEC
…st runoutLineDiff comparison and only for one simulation not all always
| inputsDF.reset_index().merge(configurationDF, on=["simName", "modelType"]).set_index("index") | ||
| ) | ||
| configFound = True | ||
| except (NotADirectoryError, FileNotFoundError) as e: |
Contributor
| ) | ||
| configFound = True | ||
| except (NotADirectoryError, FileNotFoundError) as e: | ||
| configFound = False |
Contributor
| from avaframe.com1DFA import com1DFA | ||
| from avaframe.ana3AIMEC import ana3AIMEC | ||
| from avaframe.ana4Stats import probAna | ||
| from avaframe.runScripts.runPlotAreaRefDiffs import runPlotAreaRefDiffs, createArealIndicatorPickle |
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| # inDir = pathlib.Path(avalancheDir, ("Outputs/%s/configurationFiles" % modName)) | ||
| # Read parameterSetDF | ||
| # paramSetDF = readParamSetDF(inDir, varParList) | ||
| # TODO: consider using cfgHandling/createInfoDF instead |
Contributor
| inputsDF = ( | ||
| inputsDF.reset_index().merge(configurationDF, on=["simName", "modelType"]).set_index("index") | ||
| ) | ||
| except (NotADirectoryError, FileNotFoundError) as e: |
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| keepColumnsCleaned = [kC for kC in keepColumns if kC in inputsDF.columns] | ||
| infoDF = inputsDF[keepColumnsCleaned + ["parameterSet"]] | ||
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| # TODO: this is required in ana6Optimisation |
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| indicatorDict, | ||
| simName, | ||
| cropFile=None, | ||
| Tversky="", |
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| alpha, | ||
| beta, | ||
| allResults, | ||
| resType, |
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| inputsDF.reset_index().merge(configurationDF, on=["simName", "modelType"]).set_index("index") | ||
| ) | ||
| configFound = True | ||
| except (NotADirectoryError, FileNotFoundError) as e: |
Contributor
| ) | ||
| configFound = True | ||
| except (NotADirectoryError, FileNotFoundError) as e: | ||
| configFound = False |
Contributor
| from avaframe.com1DFA import com1DFA | ||
| from avaframe.ana3AIMEC import ana3AIMEC | ||
| from avaframe.ana4Stats import probAna | ||
| from avaframe.runScripts.runPlotAreaRefDiffs import runPlotAreaRefDiffs, createArealIndicatorPickle |
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| # inDir = pathlib.Path(avalancheDir, ("Outputs/%s/configurationFiles" % modName)) | ||
| # Read parameterSetDF | ||
| # paramSetDF = readParamSetDF(inDir, varParList) | ||
| # TODO: consider using cfgHandling/createInfoDF instead |
Contributor
| inputsDF = ( | ||
| inputsDF.reset_index().merge(configurationDF, on=["simName", "modelType"]).set_index("index") | ||
| ) | ||
| except (NotADirectoryError, FileNotFoundError) as e: |
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| keepColumnsCleaned = [kC for kC in keepColumns if kC in inputsDF.columns] | ||
| infoDF = inputsDF[keepColumnsCleaned + ["parameterSet"]] | ||
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| # TODO: this is required in ana6Optimisation |
Contributor
| indicatorDict, | ||
| simName, | ||
| cropFile=None, | ||
| Tversky="", |
Contributor
| alpha, | ||
| beta, | ||
| allResults, | ||
| resType, |
Contributor
| inputsDF.reset_index().merge(configurationDF, on=["simName", "modelType"]).set_index("index") | ||
| ) | ||
| configFound = True | ||
| except (NotADirectoryError, FileNotFoundError) as e: |
Contributor
| ) | ||
| configFound = True | ||
| except (NotADirectoryError, FileNotFoundError) as e: | ||
| configFound = False |
Contributor
| from avaframe.com1DFA import com1DFA | ||
| from avaframe.ana3AIMEC import ana3AIMEC | ||
| from avaframe.ana4Stats import probAna | ||
| from avaframe.runScripts.runPlotAreaRefDiffs import runPlotAreaRefDiffs, createArealIndicatorPickle |
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| # inDir = pathlib.Path(avalancheDir, ("Outputs/%s/configurationFiles" % modName)) | ||
| # Read parameterSetDF | ||
| # paramSetDF = readParamSetDF(inDir, varParList) | ||
| # TODO: consider using cfgHandling/createInfoDF instead |
Contributor
| inputsDF = ( | ||
| inputsDF.reset_index().merge(configurationDF, on=["simName", "modelType"]).set_index("index") | ||
| ) | ||
| except (NotADirectoryError, FileNotFoundError) as e: |
Contributor
| keepColumnsCleaned = [kC for kC in keepColumns if kC in inputsDF.columns] | ||
| infoDF = inputsDF[keepColumnsCleaned + ["parameterSet"]] | ||
|
|
||
| # TODO: this is required in ana6Optimisation |
Contributor
| indicatorDict, | ||
| simName, | ||
| cropFile=None, | ||
| Tversky="", |
Contributor
| alpha, | ||
| beta, | ||
| allResults, | ||
| resType, |
Contributor
| inputsDF.reset_index().merge(configurationDF, on=["simName", "modelType"]).set_index("index") | ||
| ) | ||
| configFound = True | ||
| except (NotADirectoryError, FileNotFoundError) as e: |
Contributor
| ) | ||
| configFound = True | ||
| except (NotADirectoryError, FileNotFoundError) as e: | ||
| configFound = False |
Contributor
| from avaframe.com1DFA import com1DFA | ||
| from avaframe.ana3AIMEC import ana3AIMEC | ||
| from avaframe.ana4Stats import probAna | ||
| from avaframe.runScripts.runPlotAreaRefDiffs import runPlotAreaRefDiffs, createArealIndicatorPickle |
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| # inDir = pathlib.Path(avalancheDir, ("Outputs/%s/configurationFiles" % modName)) | ||
| # Read parameterSetDF | ||
| # paramSetDF = readParamSetDF(inDir, varParList) | ||
| # TODO: consider using cfgHandling/createInfoDF instead |
Contributor
| inputsDF = ( | ||
| inputsDF.reset_index().merge(configurationDF, on=["simName", "modelType"]).set_index("index") | ||
| ) | ||
| except (NotADirectoryError, FileNotFoundError) as e: |
Contributor
| keepColumnsCleaned = [kC for kC in keepColumns if kC in inputsDF.columns] | ||
| infoDF = inputsDF[keepColumnsCleaned + ["parameterSet"]] | ||
|
|
||
| # TODO: this is required in ana6Optimisation |
Contributor
| indicatorDict, | ||
| simName, | ||
| cropFile=None, | ||
| Tversky="", |
Contributor
| alpha, | ||
| beta, | ||
| allResults, | ||
| resType, |
Contributor
| inputsDF.reset_index().merge(configurationDF, on=["simName", "modelType"]).set_index("index") | ||
| ) | ||
| configFound = True | ||
| except (NotADirectoryError, FileNotFoundError) as e: |
Contributor
| ) | ||
| configFound = True | ||
| except (NotADirectoryError, FileNotFoundError) as e: | ||
| configFound = False |
Contributor
| from avaframe.com1DFA import com1DFA | ||
| from avaframe.ana3AIMEC import ana3AIMEC | ||
| from avaframe.ana4Stats import probAna | ||
| from avaframe.runScripts.runPlotAreaRefDiffs import runPlotAreaRefDiffs, createArealIndicatorPickle |
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| # inDir = pathlib.Path(avalancheDir, ("Outputs/%s/configurationFiles" % modName)) | ||
| # Read parameterSetDF | ||
| # paramSetDF = readParamSetDF(inDir, varParList) | ||
| # TODO: consider using cfgHandling/createInfoDF instead |
Contributor
| inputsDF = ( | ||
| inputsDF.reset_index().merge(configurationDF, on=["simName", "modelType"]).set_index("index") | ||
| ) | ||
| except (NotADirectoryError, FileNotFoundError) as e: |
Contributor
| keepColumnsCleaned = [kC for kC in keepColumns if kC in inputsDF.columns] | ||
| infoDF = inputsDF[keepColumnsCleaned + ["parameterSet"]] | ||
|
|
||
| # TODO: this is required in ana6Optimisation |
Contributor
| indicatorDict, | ||
| simName, | ||
| cropFile=None, | ||
| Tversky="", |
Contributor
| alpha, | ||
| beta, | ||
| allResults, | ||
| resType, |
Contributor
| inputsDF.reset_index().merge(configurationDF, on=["simName", "modelType"]).set_index("index") | ||
| ) | ||
| configFound = True | ||
| except (NotADirectoryError, FileNotFoundError) as e: |
Contributor
| ) | ||
| configFound = True | ||
| except (NotADirectoryError, FileNotFoundError) as e: | ||
| configFound = False |
Contributor
| from avaframe.com1DFA import com1DFA | ||
| from avaframe.ana3AIMEC import ana3AIMEC | ||
| from avaframe.ana4Stats import probAna | ||
| from avaframe.runScripts.runPlotAreaRefDiffs import runPlotAreaRefDiffs, createArealIndicatorPickle |
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| """ | ||
|
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| # Areal indicators | ||
| # TODO: make layer information more prominent - handle differently? |
Contributor
| # Read parameterSetDF | ||
| # paramSetDF = readParamSetDF(inDir, varParList) | ||
| # ------------------------- | ||
| # TODO: consider using cfgHandling/createInfoDF instead |
Contributor
| inputsDF = ( | ||
| inputsDF.reset_index().merge(configurationDF, on=["simName", "modelType"]).set_index("index") | ||
| ) | ||
| except (NotADirectoryError, FileNotFoundError) as e: |
Contributor
| keepColumnsCleaned = [kC for kC in keepColumns if kC in inputsDF.columns] | ||
| infoDF = inputsDF[keepColumnsCleaned + ["parameterSet"]] | ||
|
|
||
| # TODO: this is required in ana6Optimisation |
Contributor
| indicatorDict, | ||
| simName, | ||
| cropFile=None, | ||
| Tversky="", |
Contributor
| alpha, | ||
| beta, | ||
| allResults, | ||
| resType, |
Contributor
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This PR introduces a new optimisation module
ana6Optimisationforcom8MoTPSAand updates the simulation workflow.The module ana6Optimisation includes:
New files in ana6Opitmisaton:
runMorrisSA.py(configuration:runMorrisSACfg.ini)runPlotMorrisConvergence.py(usesrunMorrisSACfg.ini)runOptimisation.py(configuration:runOptimisationCfg.ini)optimisationUtils.pyREADME_ana6.md(contains usage instructions)New file in out3Plot:
outAna6Plots.pyChanged workflow of runing com8MoTPSA: