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Pull requests: alexdobin/STAR

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Pull requests list

feat: native ARM64 / Apple Silicon and macOS clang build support
#2694 opened Jun 26, 2026 by BenjaminDEMAILLE Loading…
5
1
fix(macOS): spawn readFilesCommand via shell (posix_spawnp) so gzipped input works
#2693 opened Jun 26, 2026 by BenjaminDEMAILLE Loading…
1
fix(build): avoid parallel-make (-j) race on generated parametersDefault.xxd
#2692 opened Jun 26, 2026 by BenjaminDEMAILLE Loading…
1
fix(macOS): 0 mapped reads on Apple Silicon (libc++ stringbuf::setbuf is a no-op)
#2691 opened Jun 26, 2026 by BenjaminDEMAILLE Loading…
1
Improve genomeGenerate multicore index build performance
#2687 opened May 20, 2026 by justinblethrow-cloud Loading…
2
Add persistent genome insertion with delta overlay mode
#2686 opened May 17, 2026 by justinblethrow-cloud Loading…
1
2
Replace limitGenomeGenerateRAM parameter by required memory
#2680 opened Apr 14, 2026 by entzian Loading…
Fix sjA/sjFilter/sjChunks memory leaks
#2676 opened Mar 4, 2026 by lkeegan Loading…
Add native CRAM output support (unsorted and coordinate-sorted) via HTSlib
#2670 opened Oct 27, 2025 by BenjaminDEMAILLE Loading…
Adding usegalaxy.org and usegalaxy.eu badges
#2666 opened Oct 14, 2025 by nekrut Loading…
Bugfix: Resolve race condition with FIFO cleanup and child process termination
#2636 opened Jun 4, 2025 by robsyme Loading…
2
Allow vW:i tag for wasp in SAM output
#2617 opened Apr 11, 2025 by ASLeonard Loading…
Silicon chip
#2605 opened Mar 2, 2025 by senku-kz Loading…
1
remove extraenous OOB write
#2163 opened Jun 28, 2024 by eternal-flame-AD Loading…
1
When soloOutFormatFeaturesGeneField3 is +, write GeneBiotype as FeaturesGeneField3.
#2071 opened Feb 24, 2024 by galaxy001 Loading…
Typo in manual? (genomeTransformVCF)
#2029 opened Jan 2, 2024 by TomHarrop Loading… 2.7.12
Support SAM vector tags
#2011 opened Nov 29, 2023 by ohad-rodeh Loading… 2.7.12
fix small typos in STARmanual.tex
#1926 opened Aug 16, 2023 by kew24 Loading…
fix: build under aarch64
#1863 opened May 22, 2023 by starsareintherose Loading…
Unbundle htslib
#1586 opened Jun 18, 2022 by SoapGentoo Contributor Loading…
20
Mapping speed improvement
#791 opened Dec 8, 2019 by suhrig Contributor Loading…
5
mapping performance improvement
#773 opened Nov 2, 2019 by alexey0308 Contributor Loading…
3
Fix Segmentation Fault Under Certain Conditions complex enhancement testing
#535 opened Dec 12, 2018 by evolvedmicrobe Loading… 2.7.11
7
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