Bump the python-packages group with 5 updates

[dependabot]

Bumps the python-packages group with 5 updates:

Package	From	To
click	8.4.1	8.4.2
numpy	1.26.4	2.2.6
tensorflow-macos	2.14.1	2.14.0
pytest	9.0.3	9.1.1
ruff	0.15.17	0.15.20

Updates click from 8.4.1 to 8.4.2

Release notes

Sourced from click's releases.

8.4.2

This is the Click 8.4.1 fix release, which fixes bugs but does not otherwise change behavior and should not result in breaking changes compared to the latest feature release.

PyPI: https://pypi.org/project/click/8.4.2/ Changes: https://click.palletsprojects.com/page/changes/#version-8-4-2 Milestone: https://github.com/pallets/click/milestone/34

• Fix Fish shell completion broken in 8.4.0 by #3126. Newlines and tabs in option help text are now escaped, keeping the original completion format while still supporting multi-line help. #3502 #3043 #3504 #3508
• Deprecated commands and options with empty or missing help text no longer render a stray leading space before the (DEPRECATED) label. #3509
• A {class}Group with invoke_without_command=True marks its subcommand as optional in the usage help, showing [COMMAND] instead of COMMAND. #3059 #3507
• echo_via_pager flushes after each write, so passing a generator streams output to the pager incrementally instead of staying hidden until the pipe buffer fills. #3242 #2542 #3534
• echo_via_pager and get_pager_file no longer close a borrowed stdout stream when no external pager runs, completing the partial I/O operation on closed file fix from #3482. #3449 #3533
• Fix CLI usage symopsis for optional arguments producing double square brackets [[a|b|c]]... whose type already brackets their metavar. #3578
• {func}version_option resolves a package_name that does not match an installed distribution as an import (top-level module) name via {func}importlib.metadata.packages_distributions. Packages whose top-level module name differs from their distribution name (PIL vs Pillow, jwt vs PyJWT) no longer raise RuntimeError out of the box. #2331 #1884 #3125 #3582

Changelog

Sourced from click's changelog.

Version 8.4.2

Released 2026-06-24

• Fix Fish shell completion broken in 8.4.0 by {pr}3126. Newlines and tabs in option help text are now escaped, keeping the original completion format while still supporting multi-line help. {issue}3502 {issue}3043 {pr}3504 {pr}3508
• Deprecated commands and options with empty or missing help text no longer render a stray leading space before the (DEPRECATED) label. {pr}3509
• A {class}Group with invoke_without_command=True marks its subcommand as optional in the usage help, showing [COMMAND] instead of COMMAND. {issue}3059 {pr}3507
• echo_via_pager flushes after each write, so passing a generator streams output to the pager incrementally instead of staying hidden until the pipe buffer fills. {issue}3242 {issue}2542 {pr}3534
• echo_via_pager and get_pager_file no longer close a borrowed stdout stream when no external pager runs, completing the partial I/O operation on closed file fix from {pr}3482. {issue}3449 {pr}3533
• Fix CLI usage symopsis for optional arguments producing double square brackets [[a|b|c]]... whose type already brackets their metavar. {pr}3578
• {func}version_option resolves a package_name that does not match an installed distribution as an import (top-level module) name via {func}importlib.metadata.packages_distributions. Packages whose top-level module name differs from their distribution name (PIL vs Pillow, jwt vs PyJWT) no longer raise RuntimeError out of the box. {issue}2331 {issue}1884 {issue}3125 {pr}3582

Commits

• b2e30a1 Release version 8.4.2
• 7a16b20 Fix package_name resolution when module differs from distribution name (#3582)
• bec5928 Fix package_name resolution when top-level module differs from distribution...
• 916883a Fix tests to not rely on -Wdefault option (#3591)
• 09195f6 Fix double-bracketing of choices in synopsis (#3578)
• 1557e26 Check for warning exception with idiomatic context manager
• d9ff133 Static typing improvements in click.shell_completion (#3460)
• 762c97e Fix double-bracketing of choices in synopsis
• 8929d39 Convert changes to markdown. (#3559)
• 237be50 Move changes headings down a level.
• Additional commits viewable in compare view

Updates numpy from 1.26.4 to 2.2.6

Release notes

Sourced from numpy's releases.

v2.2.6 (May 17, 2025)

NumPy 2.2.6 Release Notes

NumPy 2.2.6 is a patch release that fixes bugs found after the 2.2.5 release. It is a mix of typing fixes/improvements as well as the normal bug fixes and some CI maintenance.

This release supports Python versions 3.10-3.13.

Contributors

A total of 8 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

• Charles Harris
• Ilhan Polat
• Joren Hammudoglu
• Marco Gorelli +
• Matti Picus
• Nathan Goldbaum
• Peter Hawkins
• Sayed Adel

Pull requests merged

A total of 11 pull requests were merged for this release.

• #28778: MAINT: Prepare 2.2.x for further development
• #28851: BLD: Update vendor-meson to fix module_feature conflicts arguments...
• #28852: BUG: fix heap buffer overflow in np.strings.find
• #28853: TYP: fix NDArray[floating] + float return type
• #28864: BUG: fix stringdtype singleton thread safety
• #28865: MAINT: use OpenBLAS 0.3.29
• #28889: MAINT: from_dlpack thread safety fixes
• #28913: TYP: Fix non-existent CanIndex annotation in ndarray.setfield
• #28915: MAINT: Avoid dereferencing/strict aliasing warnings
• #28916: BUG: Fix missing check for PyErr_Occurred() in _pyarray_correlate.
• #28966: TYP: reject complex scalar types in ndarray.__ifloordiv__

Checksums

MD5

259343f056061f6eadb2f4b8999d06d4  numpy-2.2.6-cp310-cp310-macosx_10_9_x86_64.whl
16fa85488e149489ce7ee044d7b0d307  numpy-2.2.6-cp310-cp310-macosx_11_0_arm64.whl
f01b7aea9d2b76b1eeb49766e615d689  numpy-2.2.6-cp310-cp310-macosx_14_0_arm64.whl
f2ddc2b22517f6e31caa1372b12c2499  numpy-2.2.6-cp310-cp310-macosx_14_0_x86_64.whl
52190e22869884f0870eb3df7a283ca9  numpy-2.2.6-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
8f382b9ca6770db600edd5ea2447a925  numpy-2.2.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
e604aae2ef6e01fb92ecc39aca0424d9  numpy-2.2.6-cp310-cp310-musllinux_1_2_aarch64.whl

... (truncated)

Commits

• 2b686f6 Merge pull request #28980 from charris/prepare-2.2.6
• ed41828 REL: Prepare for the NumPy 2.2.6 release [wheel build]
• 83e4e7f Merge pull request #28966 from charris/backport-28958
• 248f0cb TYP: add rejection-tests for complex ndarray floordiv
• 5bad9da TYP: reject complex scalar types in ndarray.__ifloordiv__
• 6c42775 Merge pull request #28915 from charris/backport-28892
• 4277e7c Merge pull request #28916 from charris/backport-28898
• bd1c863 BUG: Fix missing check for PyErr_Occurred() in _pyarray_correlate. (#28898)
• 87d1d8a MAINT: Avoid dereferencing/strict aliasing warnings during complex casts in `...
• 9e50659 Merge pull request #28913 from charris/backport-28908
• Additional commits viewable in compare view

Updates tensorflow-macos from 2.14.1 to 2.14.0

Changelog

Sourced from tensorflow-macos's changelog.

Release 2.14.0

Tensorflow

Breaking Changes

• Support for Python 3.8 has been removed starting with TF 2.14. The TensorFlow 2.13.1 patch release will still have Python 3.8 support.

• tf.Tensor

  • The class hierarchy for tf.Tensor has changed, and there are now explicit EagerTensor and SymbolicTensor classes for eager and tf.function respectively. Users who relied on the exact type of Tensor (e.g. type(t) == tf.Tensor) will need to update their code to use isinstance(t, tf.Tensor). The tf.is_symbolic_tensor helper added in 2.13 may be used when it is necessary to determine if a value is specifically a symbolic tensor.

• tf.compat.v1.Session

  • tf.compat.v1.Session.partial_run and tf.compat.v1.Session.partial_run_setup will be deprecated in the next release.

Known Caveats

• tf.lite
  • when converter flag "_experimenal_use_buffer_offset" is enabled, additional metadata is automatically excluded from the generated model. The behaviour is the same as "exclude_conversion_metadata" is set
  • If the model is larger than 2GB, then we also require "exclude_conversion_metadata" flag to be set

Major Features and Improvements

• The tensorflow pip package has a new, optional installation method for Linux that installs necessary Nvidia CUDA libraries through pip. As long as the Nvidia driver is already installed on the system, you may now run pip install tensorflow[and-cuda] to install TensorFlow's Nvidia CUDA library dependencies in the Python environment. Aside from the Nvidia driver, no other pre-existing Nvidia CUDA packages are necessary.

• Enable JIT-compiled i64-indexed kernels on GPU for large tensors with more than 2**32 elements.

  • Unary GPU kernels: Abs, Atanh, Acos, Acosh, Asin, Asinh, Atan, Cos, Cosh, Sin, Sinh, Tan, Tanh.
  • Binary GPU kernels: AddV2, Sub, Div, DivNoNan, Mul, MulNoNan, FloorDiv, Equal, NotEqual, Greater, GreaterEqual, LessEqual, Less.

• tf.lite

  • Add experimental supports conversion of models that may be larger than 2GB before buffer deduplication

Bug Fixes and Other Changes

• tf.py_function and tf.numpy_function can now be used as function decorators for clearer code:

  @tf.py_function(Tout=tf.float32)
  def my_fun(x):
    print("This always executes eagerly.")
    return x+1
  

• tf.lite

  • Strided_Slice now supports UINT32.

• tf.config.experimental.enable_tensor_float_32_execution

  • Disabling TensorFloat-32 execution now causes TPUs to use float32 precision for float32 matmuls and other ops. TPUs have always used bfloat16 precision for certain ops, like matmul, when such ops had float32 inputs. Now, disabling TensorFloat-32 by calling tf.config.experimental.enable_tensor_float_32_execution(False) will cause TPUs to use float32 precision for such ops instead of bfloat16.

• tf.experimental.dtensor

  • API changes for Relayout. Added a new API, dtensor.relayout_like, for relayouting a tensor according to the layout of another tensor.
  • Added dtensor.get_default_mesh, for retrieving the current default mesh under the dtensor context.

... (truncated)

Commits

• 6c56954 Update RELEASE.md - link to dtensor fft blog post.
• dd01672 Merge pull request #61754 from elfringham/fix_214_nightly
• 02a6ddb Fix use of pypi packages by switching to release versions
• 6f7a18a Merge pull request #61751 from tensorflow/r2.14-e3d3e94de18
• 1448f56 Merge pull request #61750 from tensorflow/r2.14-418478c23b0
• b1b4f6e adding missing file schannel_int.h
• 5220dff upgrade curl 8.1.2 -> 8.2.1 which has CVE fixes
• d6ab492 Merge pull request #61739 from rtg0795/r2.14
• 03fe327 release_updater.sh with stable keras, tensorboard, tensorflow-estimator
• 36e2d6e Update RELEASE.md (#61735)
• See full diff in compare view

Updates pytest from 9.0.3 to 9.1.1

Release notes

Sourced from pytest's releases.

9.1.1

pytest 9.1.1 (2026-06-19)

Bug fixes

• #14220: Fixed a logic bug in pytest.RaisesGroup which would might cause it to display incorrect "It matches FooError() which was paired with BarError" messages.
• #14591: Fixed a regression in pytest 9.1.0 which caused overriding a parametrized fixture with an indirect @​pytest.mark.parametrize to fail with "duplicate parametrization of '<fixture name>'".
• #14606: Fixed list-item typing errors from mypy in @pytest.mark.parametrize <pytest.mark.parametrize ref> argvalues parameter.
• #14608: Fixed a regression in pytest 9.1.0 where conftest.py files located in <invocation dir>/test* were no longer loaded as initial conftests when invoked without arguments. This could cause certain hooks (like pytest_addoption) in these files to not fire.

9.1.0

pytest 9.1.0 (2026-06-13)

Removals and backward incompatible breaking changes

• #14533: When using --doctest-modules, autouse fixtures with module, package or session scope that are defined inline in Python test modules (not plugins or conftests) will now possibly execute twice.

  If this is undesirable, move the fixture definition to a conftest.py file if possible.

  Technical explanation for those interested: When using --doctest-modules, pytest possibly collects Python modules twice, once as pytest.Module and once as a DoctestModule (depending on the configuration). Due to improvements in pytest's fixture implementation, if e.g. the DoctestModule collects a fixture, it is now visible to it only, and not to the Module. This means that both need to register the fixtures independently.

Deprecations (removal in next major release)

• #10819: Added a deprecation warning for class-scoped fixtures defined as instance methods (without @classmethod). Such fixtures set attributes on a different instance than the test methods use, leading to unexpected behavior. Use @classmethod decorator instead -- by yastcher.

  See 10819 and 14011.

• #12882: Calling request.getfixturevalue() <pytest.FixtureRequest.getfixturevalue> during teardown to request a fixture that was not already requested is now deprecated and will become an error in pytest 10.

  See dynamic-fixture-request-during-teardown for details.

• #13409: Using non-~collections.abc.Collection iterables (such as generators, iterators, or custom iterable objects) for the argvalues parameter in @pytest.mark.parametrize <pytest.mark.parametrize ref> and metafunc.parametrize <pytest.Metafunc.parametrize> is now deprecated.

  These iterables get exhausted after the first iteration, leading to tests getting unexpectedly skipped in cases such as running pytest.main() multiple times, using class-level parametrize decorators, or collecting tests multiple times.

  See parametrize-iterators for details and suggestions.

• #13946: The private config.inicfg attribute is now deprecated. Use config.getini() <pytest.Config.getini> to access configuration values instead.

  See config-inicfg for more details.

• #14004: Passing baseid to ~pytest.FixtureDef or nodeid strings to fixture registration APIs is now deprecated. These are internal pytest APIs that are used by some plugins.

... (truncated)

Commits

• cf470ec Prepare release version 9.1.1
• e0c8ce6 Merge pull request #14625 from pytest-dev/patchback/backports/9.1.x/a07c31a97...
• 1b82d16 Merge pull request #14624 from pytest-dev/patchback/backports/9.1.x/b375b79ec...
• 501c4bc Merge pull request #14596 from bluetech/doc-classmethod
• b61f588 Merge pull request #14622 from chrisburr/fix-14608-initial-conftest-test-subdir
• 9a567e0 [automated] Update plugin list (#14617) (#14618)
• ef8b299 Merge pull request #14620 from pytest-dev/patchback/backports/9.1.x/680f9f3ed...
• 66abd07 Merge pull request #14220 from bysiber/fix-stale-iexp-raisesgroup
• 79fbf93 Merge pull request #14612 from pytest-dev/patchback/backports/9.1.x/974ed48b6...
• 0d312eb Merge pull request #14611 from bluetech/parametrize-argvalues-typing
• Additional commits viewable in compare view

Updates ruff from 0.15.17 to 0.15.20

Release notes

Sourced from ruff's releases.

0.15.20

Release Notes

Released on 2026-06-25.

Preview features

• Allow human-readable names in rule selectors (#25887)
• Emit a warning instead of an error for unknown rule selectors (#26113)
• Match noqa shebang handling in ruff:ignore comments (#26286)
• [ruff] Remove pytest-fixture-autouse (RUF076) (#26240, #26371)

Documentation

• Add versioning sections to custom crate READMEs (#26317)
• Update ruff_python_parser README for crates.io (#26315)
• [perflint] Clarify that PERF402 applies to any iterable (#26242)

Contributors

• @​dhruvmanila
• @​MichaReiser
• @​ntBre
• @​trilamsr

Install ruff 0.15.20

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://releases.astral.sh/github/ruff/releases/download/0.15.20/ruff-installer.sh | sh

Install prebuilt binaries via powershell script

powershell -ExecutionPolicy Bypass -c "irm https://releases.astral.sh/github/ruff/releases/download/0.15.20/ruff-installer.ps1 | iex"

Download ruff 0.15.20

File	Platform	Checksum
ruff-aarch64-apple-darwin.tar.gz	Apple Silicon macOS	checksum
ruff-x86_64-apple-darwin.tar.gz	Intel macOS	checksum
ruff-aarch64-pc-windows-msvc.zip	ARM64 Windows	checksum
ruff-i686-pc-windows-msvc.zip	x86 Windows	checksum
ruff-x86_64-pc-windows-msvc.zip	x64 Windows	checksum
ruff-aarch64-unknown-linux-gnu.tar.gz	ARM64 Linux	checksum
ruff-i686-unknown-linux-gnu.tar.gz	x86 Linux	checksum

... (truncated)

Changelog

Sourced from ruff's changelog.

0.15.20

Released on 2026-06-25.

Preview features

• Allow human-readable names in rule selectors (#25887)
• Emit a warning instead of an error for unknown rule selectors (#26113)
• Match noqa shebang handling in ruff:ignore comments (#26286)
• [ruff] Remove pytest-fixture-autouse (RUF076) (#26240, #26371)

Documentation

• Add versioning sections to custom crate READMEs (#26317)
• Update ruff_python_parser README for crates.io (#26315)
• [perflint] Clarify that PERF402 applies to any iterable (#26242)

Contributors

• @​dhruvmanila
• @​MichaReiser
• @​ntBre
• @​trilamsr

0.15.19

Released on 2026-06-23.

Preview features

• Support human-readable names when hovering suppression comments and in code actions (#26114)

Bug fixes

• Fall back to default settings when editor-only settings are invalid (#26244)
• Fix panic when inserting text at a notebook cell boundary (#26111)

Rule changes

• [pylint] Update fix suggestions for __floor__, __trunc__, __length_hint__, and __matmul__ variants (PLC2801) (#26239)

Performance

• Avoid allocating when parsing single string literals (#26200)
• Avoid reallocating singleton call arguments (#26223)
• Lazily create source files for lint diagnostics (#26226)
• Optimize formatter text width and indentation (#26236)
• Reserve capacity for builtin bindings (#26229)
• Skip repeated-key checks for singleton dictionaries (#26228)
• Use ArrayVec for qualified name segments (#26224)

... (truncated)

Commits

• f82a36b Bump 0.15.20 (#26376)
• af32943 Improve the summarise-ecosystem-results skill (#26378)
• 485ebab Remove RUF076 name from schema (#26371)
• ef81835 [ty] Implement rust-analyzer's "Click for full compiler diagnostic" feature (...
• 572b31e [ruff] Remove pytest-fixture-autouse (RUF076) (#26240)
• f703f21 Allow human-readable names in rule selectors (#25887)
• 0d726b2 [ty] Reuse equality semantics for membership compatibility (#25955)
• dbe6e98 [ty] Infer definite equality comparison results (#26337)
• e700ea3 [ty] Prove TypedDict structural patterns exhaustive (#26285)
• 6a0d2ec [ty] Widen inferred class-valued instance attributes (#26338)
• Additional commits viewable in compare view

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[d33bs]

@gwaybio could I ask for a double check on this - I made some modifications. Thanks!

[d33bs]

Thanks @gwaybio !