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Thousands of FutureWarnings with pandas 2.2.3

Status: Open.

#32 In kusterlab/SIMSI-Transfer;

· MatthewThe opened on Sep 10, 2025

Fragpipe

Status: Open.

#30 In kusterlab/SIMSI-Transfer;

· cutleraging opened on Apr 7, 2025

Raise error when MS3 quan is selected but there are no MS3 spectra found for (some) raw files

Status: Open.

#28 In kusterlab/SIMSI-Transfer;

· fhamood opened on Apr 4, 2024

NaNs in Mass column for transfers results

Status: Open.

#25 In kusterlab/SIMSI-Transfer;

· MatthewThe opened on Dec 14, 2023

Example Datasets do not contain allPeptides.txt files

Status: Open.

#23 In kusterlab/SIMSI-Transfer;

· fhamood opened on Dec 21, 2022

Raise error when supposed-to-be-equal values in clusters are not equal (e.g. charge state)

Status: Open.

#22 In kusterlab/SIMSI-Transfer;

· fhamood opened on Nov 18, 2022

Retain modification-specific columns

Status: Open.

#18 In kusterlab/SIMSI-Transfer;

· fhamood opened on Oct 11, 2022

Evidence column with intensity proportions SIMSI vs MQ

Status: Open.

#16 In kusterlab/SIMSI-Transfer;

· fhamood opened on Sep 26, 2022

iTRAQ support

Status: Open.

#13 In kusterlab/SIMSI-Transfer;

· fhamood opened on Sep 16, 2022