fix(gatk4/haplotypecaller): replace empty touch with echo gzip in stub#11941
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JP-Bro wants to merge 1 commit into
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fix(gatk4/haplotypecaller): replace empty touch with echo gzip in stub#11941JP-Bro wants to merge 1 commit into
JP-Bro wants to merge 1 commit into
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PR checklist
Closes #8887
Description
Replaces
echo | gzipwithecho "" | gzipin the stub section of gatk4/haplotypecaller.The previous
echo | gzipcommand created an invalid gzip file which causedEOFException errors when nf-test tried to read the snapshot. Using
echo "" | gzipcreates a valid (though minimal) gzip file that passes snapshot testing correctly.