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Improve README onboarding section#489

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HussainAther wants to merge 2 commits into
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HussainAther:issue-461-readme-onboarding
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Improve README onboarding section#489
HussainAther wants to merge 2 commits into
OpenwaterHealth:mainfrom
HussainAther:issue-461-readme-onboarding

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@HussainAther

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Closes #461

Summary

This PR improves the onboarding section at the top of the README to help first-time visitors quickly understand the project before reaching the installation instructions.

The new introduction:

  • explains what Open-LIFU is in plain language
  • identifies the primary audiences (developers, researchers, and clinicians)
  • clarifies the current project status, including the ongoing MATLAB → Python migration
  • includes a short research-use-only/FDA disclaimer
  • adds links to the Community Hub, Discord, and Good First Issues

The existing installation instructions and technical setup documentation below the onboarding section are left unchanged.

Motivation

The README is the first entry point for many potential users and contributors. This update provides context about the project, its intended audiences, its current development status, and where new contributors can get involved before diving into installation and technical documentation.

Testing

  • Verified all README links and Markdown formatting.
  • Confirmed that only the onboarding section above the installation instructions was modified.

Comment thread README.md Outdated
@@ -1,18 +1,28 @@
# openlifu
# Open-LIFU

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The python library is called openlifu

Comment thread README.md
Comment on lines -3 to -9
[![Actions Status](https://github.com/OpenwaterHealth/OpenLIFU-python/workflows/CI/badge.svg)](https://github.com/OpenwaterHealth/OpenLIFU-python/actions)
[![Documentation Status](https://readthedocs.org/projects/openlifu/badge/?version=latest)](https://openlifu.readthedocs.io/en/latest/?badge=latest)
Open-LIFU is an open-source Python platform for planning, simulating, and controlling low-intensity focused ultrasound (LIFU) experiments. It helps researchers and developers build reproducible focused ultrasound workflows for planning, medical imaging, acoustic simulation, hardware communication, and experimental research while continuing the capabilities of the original MATLAB open-TFUS toolbox.

[![PyPI version](https://img.shields.io/pypi/v/openlifu)](https://pypi.org/project/openlifu/)
[![PyPI platforms](https://img.shields.io/pypi/pyversions/openlifu)](https://pypi.org/project/openlifu/)
## Who is Open-LIFU for?

[![GitHub Discussion](https://img.shields.io/static/v1?label=Discussions&message=Ask&color=blue&logo=github)](https://github.com/OpenwaterHealth/OpenLIFU-python/discussions)

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Why remove badges?

Comment thread README.md
[![GitHub Discussion](https://img.shields.io/static/v1?label=Discussions&message=Ask&color=blue&logo=github)](https://github.com/OpenwaterHealth/OpenLIFU-python/discussions)
**Developers** can contribute to an actively evolving scientific software platform for focused ultrasound research, medical imaging, and hardware integration.

<!-- SPHINX-START -->

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This tells the documentation's home page where to start: https://openlifu.readthedocs.io/en/latest/includeme.html

@HussainAther

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ty for catching these.

restored the openlifu heading, all existing badges, and the SPHINX-START marker, and moved the new onboarding content below them.

@ebrahimebrahim ebrahimebrahim left a comment

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Thanks for fixing! Added more comments

Comment thread README.md

OpenLIFU is actively developed as the Python successor to the MATLAB open-TFUS toolbox. The migration from MATLAB to Python is ongoing, with regular releases and active contributions from researchers and software developers.

> **Research Use Only.** OpenLIFU is investigational software. It has **not** been evaluated or cleared by the U.S. Food and Drug Administration (FDA) and is **not** intended for the diagnosis or treatment of any disease.

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This disclaimer is already at the bottom

Comment thread README.md
Comment on lines +31 to +33
- 🌐 **Community Hub** – <https://openwaterhealth.github.io/openwater-community/>
- 💬 **Discord** – <https://discord.gg/openwater>
- 🚀 **Good First Issues** – <https://github.com/OpenwaterHealth/OpenLIFU-python/issues?q=is%3Aissue+is%3Aopen+label%3A%22good+first+issue%22>

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There is also a never-used https://github.com/OpenwaterHealth/openlifu-python/discussions ... IDK if we want to condone its use or keep that sort of thing on discord.

There's the API docs https://openlifu.readthedocs.io/en/latest/

There's the general openwater onboarding guide for openlifu: https://openwaterhealth.github.io/openwater-community/quickstart-open-lifu.html

Would be good to hear from Openwater folks on what exactly they'd want to link in this list.

Comment thread README.md

## Project status

OpenLIFU is actively developed as the Python successor to the MATLAB open-TFUS toolbox. The migration from MATLAB to Python is ongoing, with regular releases and active contributions from researchers and software developers.

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I don't think the matlab toolbox should be mentioned anymore at this point but @peterhollender can comment

Comment thread README.md
Comment on lines +13 to +21
OpenLIFU is an open-source Python platform for planning, simulating, and controlling low-intensity focused ultrasound (LIFU) experiments. It helps researchers and developers build reproducible focused ultrasound workflows for planning, medical imaging, acoustic simulation, hardware communication, and experimental research while continuing the capabilities of the original MATLAB open-TFUS toolbox.

## Who is OpenLIFU for?

**Developers** can contribute to an actively evolving scientific software platform for focused ultrasound research, medical imaging, and hardware integration.

**Researchers** can build reproducible planning, simulation, and experimental workflows using an open-source Python ecosystem.

**Clinicians** can explore the project's research software and follow its progress, although it is intended for research rather than clinical use.

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Here instead of talking about the OpenLIFU platform in general we want to introduce this repo. What is this repo and how would you know if you're in the right place here or operating at the software layer you want. Openwater's quickstart is good for understanding this: https://openwaterhealth.github.io/openwater-community/quickstart-open-lifu.html

We don't need to bin people into clinicians and researchers and so on. Just say what this python library is in a brief way that makes it immediately clear for someone if they should read on and keep digging into this.

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Improve the Open-LIFU README onboarding section

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